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FW: [R] [R-pkgs] FW: Announce: RPy version 0.3.3
by Samir Mishra 17 Jan '04

17 Jan '04

-----Original Message----- From: Warnes, Gregory R [mailto:gregory_r_warnes@groton.pfizer.com] Sent: Friday, January 16, 2004 12:55 To: R-Packages (E-mail) Subject: [R] [R-pkgs] FW: Announce: RPy version 0.3.3 > -----Original Message----- > From: Warnes, Gregory R > Sent: Friday, January 16, 2004 3:52 AM > To: 'r-packages'; 'python-announce '; 'rsoap-talk'; 'Dan Nathan'; 'RPy > List' > Subject: Announce: RPy version 0.3.3 > > > RPy Version 0.3.3 is now available from the RPy home page at > http://rpy.sf.net. > > What is RPy? > -------------------- > > RPy is a very simple, yet robust, Python (http://www.python.org) interface > to the R environment for statistical data analysis and graphics > (http://www.r-project.org) RPy can manages translation between python > and R formats for all kinds of R objects and can execute arbitrary R > functions (including the graphic functions). All errors from the R > language are converted to proper Python exceptions. All module installed > on the R system are available from Python. > > Consequently, RPy allows Python programmers to easily add advanced > statistical functionality to Python programs. It allows R programmers the > ability to use Python to control R computations and to interface them with > other systems. Examples include RSOAP > (http://www.analytics.washington.edu/Zope/projects/RSOAP) RSessionDA > (http://www.analytics.washington.edu/Zope/projects/RSOAP) and RStatServer > (http://www.analytics.washington.edu/Zope/projects/RStatServer) These > products, which make heavy use of RPy have been used in a production > environments for two years. > > New features in 0.3.3 > ------------------------------- > > o Now works with R 1.8.X > > o Windows version merged into the Unix source tree > > o Added lcall() method for calling R functions using a list of (name, > value) pairs for the parameters. This is works around the python > (mis-)feature of using unordered python dictionaries for named > parameters, resulting in the loss of order for named parameters. > > o All reported bugs have been fixed. > > o New maintainer: Gregory R. Warnes <gregory_r_warnes(a)groton.pfizer.com> > > > For more information visit the RPy home page at http://rpy.sf.net, or the > RPy SourceForge project page at http://www.sf.net/projects/rpy. LEGAL NOTICE\ Unless expressly stated otherwise, this messag...{{dropped}} _______________________________________________ R-packages mailing list R-packages(a)stat.math.ethz.ch https://www.stat.math.ethz.ch/mailman/listinfo/r-packages ______________________________________________ R-help(a)stat.math.ethz.ch mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html

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Any way to rebuild the Zope Database?
by Petter Holmström 16 Jan '04

16 Jan '04

Hello, Is there any way to "rebuild" the Zope Database? Our production server has been through a lot of updates and it looks like our database contains a lot of objects with broken properties. Is there any way to fix this? -Petter-

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HTML-Kit
by Brian Sullivan 16 Jan '04

16 Jan '04

I have been using HTML-Kit/External Editor ( http://www.chami.com/html-kit / http://zope.org/Members/Caseman/ExternalEditor )-- a useful combination that seems to handle python and page templates well. It seems to do nothing for dtml though ( well not entirely true it lets you edit it as text-- but no colour coding or other text editing aids). Has anybody ever seen/created any dtml related plug-ins for this program?

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Re: [Zope] CMFStaging, ZEO
by Michael Havard 16 Jan '04

16 Jan '04

Are there particular products you suggest that would be useful to accomplish this. For instance is there a particular product that you use for getting objects down to the file system (ExtFile, LocalFS, Files System Directory View). Would the files then be editable from both the ZMI and the FS or just one. Could we also use one of the ZOPE CVS products or are you strictly using the FS, an external editor, and CVS from the FS. I've used zsyncer in the past and it's worked fairly well and I'm comfortable using it again if necessary. Is there a method for triggering it from the command line. My main concern is that another team will be supporting migration efforts and if they can do it with a script from the command line all the better. Any products to help keep the site content seperate from the code. I've looked into using DBTab to mount an external db but I've seen a few posts with problems using it in plone. >From: Dieter Maurer <dieter(a)handshake.de> >To: "Michael Havard" <nhavar(a)hotmail.com> >CC: zope(a)zope.org >Subject: Re: [Zope] CMFStaging, ZEO >Date: Wed, 14 Jan 2004 22:37:35 +0100 >MIME-Version: 1.0 >Received: from mc12-f21.hotmail.com ([65.54.167.157]) by >mc12-s17.hotmail.com with Microsoft SMTPSVC(5.0.2195.6824); Wed, 14 Jan >2004 14:25:02 -0800 >Received: from mail.python.org ([12.155.117.29]) by mc12-f21.hotmail.com >with Microsoft SMTPSVC(5.0.2195.6824); Wed, 14 Jan 2004 14:25:02 -0800 >Received: from localhost.localdomain ([127.0.0.1] helo=mail.python.org)by >mail.python.org with esmtp (Exim 4.22)id 1AgtQL-0000hk-9F; Wed, 14 Jan 2004 >17:23:41 -0500 >Received: from srv3.handshake.de ([193.141.176.9])by mail.python.org with >esmtp (Exim 4.22) id 1AgtPh-0000Zt-Uhfor zope(a)zope.org; Wed, 14 Jan 2004 >17:23:02 -0500 >Received: from linux.local (hs3-249.handshake.de [193.141.176.249])by >srv3.handshake.de (Postfix) with ESMTPid 1160231FC0; Wed, 14 Jan 2004 >22:18:33 +0100 (CET) >Received: (from dieter@localhost)by linux.local (8.11.6/8.11.6/SuSE Linux >0.5) id i0ELbat04744;Wed, 14 Jan 2004 22:37:36 +0100 >X-Message-Info: LGjzam7y+LvLeoPIrRzW1hQW8AA7qBC4WWXJbMt+7sA= >Message-ID: <16389.46751.931916.319759(a)gargle.gargle.HOWL> >In-Reply-To: <Law9-F1227R3eX1MNNH00023ce7(a)hotmail.com> >References: <Law9-F1227R3eX1MNNH00023ce7(a)hotmail.com> >X-Mailer: VM 7.04 under 21.4 (patch 8) "Honest Recruiter" XEmacs Lucid >X-Spam-Status: OK (zopelist 0.000) >X-BeenThere: zope(a)zope.org >X-Mailman-Version: 2.1.4 >Precedence: list >List-Id: Users of the Z Object Publishing Environment <zope.zope.org> >List-Unsubscribe: ><http://mail.zope.org/mailman/listinfo/zope>,<mailto:zope-request@zope.org?subject=unsubscribe> >List-Archive: <http://mail.zope.org/pipermail/zope> >List-Post: <mailto:zope@zope.org> >List-Help: <mailto:zope-request@zope.org?subject=help> >List-Subscribe: ><http://mail.zope.org/mailman/listinfo/zope>,<mailto:zope-request@zope.org?subject=subscribe> >Errors-To: zope-bounces(a)zope.org >Return-Path: zope-bounces(a)zope.org >X-OriginalArrivalTime: 14 Jan 2004 22:25:02.0576 (UTC) >FILETIME=[40CC9700:01C3DAED] > >Michael Havard wrote at 2004-1-13 20:05 +0000: > >Does anyone have any tips for setting up CMFStaging. I'm just starting to > >fumble my way through it and I've only found two posts with any real > >information about setting it up. > > > >Essentially my architecture is this: > >Three separate machines: > >DEV > >QA > >PROD > >"CMFStaging" is not for this use case. >Instead, it support DEV, QA and PROD stages for *content* (only) >inside a single CMF instance. > >We approach your problem like this: > > * put everything possible (templates, scripts, products) > into file system. > > Use CVS to manage these resources. > "QA" and "PROD" use CVS to fetch "released" revisions > from the CVS repository > > * use ZSyncer to sync configuration data in the ZODB from DEV to > QA and from QA to PROD. > > * ensure a proper separation of content between DEV, QA, and PROD. > All have their own content (which must never get mixed). > QA occationally gets a fresh copy of PROD's content. > >-- >Dieter > >_______________________________________________ >Zope maillist - Zope(a)zope.org >http://mail.zope.org/mailman/listinfo/zope >** No cross posts or HTML encoding! ** >(Related lists - > http://mail.zope.org/mailman/listinfo/zope-announce > http://mail.zope.org/mailman/listinfo/zope-dev ) _________________________________________________________________ Get a FREE online virus check for your PC here, from McAfee. http://clinic.mcafee.com/clinic/ibuy/campaign.asp?cid=3963

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-- Please help -- Neoboard problem
by Sean Kelley 16 Jan '04

16 Jan '04

Hello, I had a weird problem where someone posted a reply to a message which sent a copy to the board manager. The manager sees an HTML view of the board in email. They saw a particular message in email which does not show up on the live board. In an attempt to fix it I tried a number of thing including reindexing, clearing indexes, etc. Now the message is still not there and I am seeing URL problems like repeated folders: http://ut-web/utilities/Special%20Groups/Org_Change/Communications_Committee /comm_board/utilities/Special%20Groups/Org_Change/Communications_Committee/c omm_board/utilities/Special%20Groups/Org_Change/Communications_Committee/com m_board?expand_all=1 Now, when someone tries to post a message or a reply to a message they get this error (which is the REAL problem now): Error Type AttributeError Error Value 'None' object has no attribute 'getNeoBoardArticleURL' I have seen the url problems before and it was suggested by Neoboard's author that I update the code which fixed this. I get the latest CVS of the code which I did and the problems went away. It seems that when a reindex or a clear and find is done, things go crazy. I am not ready to update code if there is new code available yet because I do not want to over complicate the issue Any suggestions? I have not had problems since this first time. Zope 2.6.1, Plone 1.0.3, NeoBoard (Installed product NeoBoard (NeoBoard 1.1 ( stable ))) , NeoPortalLibrary (Installed product NeoPortalLibrary (NeoPortal Library 0.9b (Development))) Traceback (innermost last): Module ZPublisher.Publish, line 98, in publish Module ZPublisher.mapply, line 88, in mapply Module ZPublisher.Publish, line 39, in call_object Module Products.CMFCore.FSPythonScript, line 90, in __call__ Module Shared.DC.Scripts.Bindings, line 252, in __call__ Module Shared.DC.Scripts.Bindings, line 283, in _bindAndExec Module Products.CMFCore.FSPythonScript, line 124, in _exec - __traceback_info__: ({'script': , 'context': , 'container': , 'traverse_subpath': []}, ('testor', '', '', "Re:Who's Listening to Who?", ' test \r\n ---------------------------------------- :s The Results Group said they found out that workers felt the #1 problem with Utilities was rotation. If this is the truth why are we going to expand it farther instead of getting rid of it? Is this what the experts (The Results Group) think will make things better? ', [], 0), {}, (None, None, '', '', '', [], 0)) Module Script (Python), line 13, in neoboard_article_reply Module Products.NeoBoard.NeoBoardArticle, line 344, in manage_addNeoBoardArticleReply Module Products.NeoBoard.NeoBoardBase, line 817, in mailNeoBoardContent Module Shared.DC.Scripts.Bindings, line 252, in __call__ Module Shared.DC.Scripts.Bindings, line 283, in _bindAndExec Module Products.CMFCore.FSPageTemplate, line 163, in _exec Module Products.PageTemplates.ZopePageTemplate, line 228, in _exec Module Products.CMFCore.FSPageTemplate, line 139, in pt_render Module Products.PageTemplates.PageTemplate, line 95, in pt_render - Module TAL.TALInterpreter, line 200, in __call__ Module TAL.TALInterpreter, line 244, in interpret Module TAL.TALInterpreter, line 703, in do_useMacro Module TAL.TALInterpreter, line 244, in interpret Module TAL.TALInterpreter, line 726, in do_defineSlot Module TAL.TALInterpreter, line 244, in interpret Module TAL.TALInterpreter, line 414, in do_optTag_tal Module TAL.TALInterpreter, line 399, in do_optTag Module TAL.TALInterpreter, line 394, in no_tag Module TAL.TALInterpreter, line 244, in interpret Module TAL.TALInterpreter, line 669, in do_condition Module TAL.TALInterpreter, line 244, in interpret Module TAL.TALInterpreter, line 412, in do_optTag_tal Module TAL.TALInterpreter, line 394, in no_tag Module TAL.TALInterpreter, line 244, in interpret Module TAL.TALInterpreter, line 703, in do_useMacro Module TAL.TALInterpreter, line 244, in interpret Module TAL.TALInterpreter, line 412, in do_optTag_tal Module TAL.TALInterpreter, line 394, in no_tag Module TAL.TALInterpreter, line 244, in interpret Module TAL.TALInterpreter, line 412, in do_optTag_tal Module TAL.TALInterpreter, line 394, in no_tag Module TAL.TALInterpreter, line 244, in interpret Module TAL.TALInterpreter, line 669, in do_condition Module TAL.TALInterpreter, line 244, in interpret Module TAL.TALInterpreter, line 414, in do_optTag_tal Module TAL.TALInterpreter, line 399, in do_optTag Module TAL.TALInterpreter, line 394, in no_tag Module TAL.TALInterpreter, line 244, in interpret Module TAL.TALInterpreter, line 636, in do_loop_tal Module TAL.TALInterpreter, line 244, in interpret Module TAL.TALInterpreter, line 414, in do_optTag_tal Module TAL.TALInterpreter, line 399, in do_optTag Module TAL.TALInterpreter, line 394, in no_tag Module TAL.TALInterpreter, line 244, in interpret Module TAL.TALInterpreter, line 295, in do_startTag Module TAL.TALInterpreter, line 363, in attrAction_tal Module Products.PageTemplates.TALES, line 223, in evaluateText Module Products.PageTemplates.TALES, line 217, in evaluate - Line 71, Column 20 - Expression: - Names: {'container': , 'default': , 'here': , 'loop': , 'modules': , 'nothing': None, 'options': {'args': (, )}, 'repeat': , 'request': , 'root': , 'template': , 'traverse_subpath': [], 'user': Sean_Kelley} Module Products.PageTemplates.ZRPythonExpr, line 48, in __call__ - __traceback_info__: test(is_article and here.getNeoBoardArticleURL()==item.getNeoBoardArticleURL(), 'hot', test( item.meta_type=='NeoBoard Notice Article', 'notice_article', test(oddrow, 'even', 'odd'))) Module Python expression "test(is_article and here.getNeoBoardArticleURL()==item.getNeoBoardArticleURL(), 'hot', test( item.meta_type=='NeoBoard Notice Article', 'notice_article', test(oddrow, 'even', 'odd')))", line 2, in f AttributeError: 'None' object has no attribute 'getNeoBoardArticleURL' Sean

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RE:Zope/IIS and Plone
by Sean Kelley 16 Jan '04

16 Jan '04

Subject: RE: Zope/IIS and Plone Thanks for getting back to me. I tried this and I do see the plone site now but graphics are no coming through and neither is the default skin info... http://www.ci.santa-rosa.ca.us/utilities/ I get a plain text looking layout and see this message at the bottom of the page: If you can read this text, it means you are not experiencing the Plone design at its best. Plone makes heavy use of CSS, which means it is accessible to any internet browser, but the design needs a standards-compliant browser to look like we intended it. Just so you know ;) So it seems like something else is not making it through Thanks for your help, Sean -----Original Message----- From: Leonardo Rochael Almeida [mailto:leo@hiper.com.br] Sent: Tuesday, January 13, 2004 6:01 AM To: Kelley, Sean Cc: 'suporte(a)hiper.com.br'; 'zope(a)zope.org' Subject: Re: Zope/IIS and Plone On Wed, 2004-01-07 at 16:34, Kelley, Sean wrote: > Hi, > I have been using the IIS script > (http://www.zope.org/Members/hiperlogica/ASP404) for serving zope > through IIS with a regular zope folder successfully. I now want to > direct to a plone site (at the same level as my other redirections). > For some reason this does not work. I have the Virtual Host Monster > at the root. I tried putting a copy of the Virtual Host Monster in > the plone site but this did not work either. Do you know how to make this work? Hi Sean, sorry for taking so long to answer. It'd be better if you had provided us with some more information about why/how it didn't work, like how you configured it and what error messages you saw. But I suspect what is the problem in your case. The handling of "Expires:" headers in ASP404 is broken. Just comment out (put a single quote before) the lines that look like if lhName = "expires" then ' ditto for Expires: Response.ExpiresAbsolute = hValue bValidHeader = false end if It should work after that. Cheers. PS: memo to self: make a new release eventually -- Leonardo Rochael Almeida

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CVSFile problems
by Michael Havard 16 Jan '04

16 Jan '04

I've installed CVSFile and been able to get a new file into my site. Unfortunately after I can't seem to do anything else. When using the CVS tab and trying any of the options I just get a generic DEBUG MESSAGE for whatever method it called. The problem there is that there's no associated log entry or debug text even when debugging has been turned on. Anyone have any experience with CVSFile? _________________________________________________________________ There are now three new levels of MSN Hotmail Extra Storage! Learn more. http://join.msn.com/?pgmarket=en-us&page=hotmail/es2&ST=1

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Sybase as storage
by Tim Terlegård 16 Jan '04

16 Jan '04

I'd like (read the company would like) to store all data in a Sybase database instead of using zodb. What solutions are there? I've read some about APE and Sybase DA. APE doesn't seem to support Sybase (only mysql and postgresql?) and to use Sybase DA I have to rewrite all code to use Z SQL methods. Is this information correct? Are there other alternatives or is it impossible to have Zope store all data in a Sybase RDBMS without rewriting all products to use Z SQL methods? Tim

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Zope 2.6.3 and packing
by Roel Van den Bergh 16 Jan '04

16 Jan '04

Hi, I just installed a vanilla Zope 2.6.3 build from source with Python 2.1.3 from source, installed CMF and NuxUserGroups on top of it. Imported a CMF site from a 2.5.1 production Zope server and started playing around. Did not encounter many problems (yet) But every time I try to pack the Data.fs I get : Error Type: IOError Error Value: [Errno 13] Permission denied: '/usr/local/zope/2-6-3/var/Data.fs.pack' I've added 'zope' as a user to the system with 'nologin', added zope to my group 'roelvdb' and started Zope with option -u zope I've been playing around with security settings of files and folders, but I do not seem to get the right combination Does any one have an idea or a walktrough? TIA, Roel [root@w2depost05 2-6-3]# ls -al total 228 drwxrwxr-x 11 roelvdb roelvdb 4096 Jan 15 14:55 . drwxrwx--- 5 nobody roelvdb 4096 Jan 16 13:22 .. -rw-r--r-- 1 roelvdb roelvdb 57 Jul 9 2002 .cvsignore drwxrwxr-x 5 roelvdb roelvdb 4096 Jan 9 00:05 doc drwxrwxr-x 2 roelvdb roelvdb 4096 Jan 9 00:05 Extensions drwxrwxr-x 2 roelvdb roelvdb 4096 Jan 16 13:01 import drwxrwxr-x 2 roelvdb roelvdb 4096 Jan 15 11:47 inst drwxrwxr-x 4 roelvdb roelvdb 4096 Jan 9 00:05 lib -rw-r--r-- 1 roelvdb roelvdb 2366 Nov 28 2001 LICENSE.txt -rw-r--r-- 1 roelvdb roelvdb 164 May 9 2003 Makefile drwxrwxr-x 7 roelvdb roelvdb 4096 Jan 15 11:47 pcgi -rw-r--r-- 1 roelvdb roelvdb 1452 Aug 20 2002 README.txt -rw-r--r-- 1 roelvdb roelvdb 36545 Apr 30 2003 setup.py -rw-r--r-- 1 root root 27612 Jan 15 11:47 setup.pyc -rwx--x--x 1 root root 585 Jan 15 14:55 start -rwx--x--x 1 root root 55 Jan 15 11:49 stop -rw-r--r-- 1 roelvdb roelvdb 418 Jul 23 2002 stupid_clean drwxrwxr-x 3 roelvdb roelvdb 4096 Jan 15 11:47 utilities drwxr-x--t 2 root roelvdb 4096 Jan 16 14:12 var -rw-r--r-- 1 roelvdb roelvdb 1468 Aug 14 2002 wo_pcgi.py -rw-r--r-- 1 root root 1591 Jan 15 11:47 wo_pcgi.pyc -rw-r--r-- 1 roelvdb roelvdb 1320 Aug 14 2002 w_pcgi.py -rw-r--r-- 1 root root 1369 Jan 15 11:47 w_pcgi.pyc -rw-r--r-- 1 roelvdb roelvdb 31559 Jan 15 11:59 z2.py -rw-r--r-- 1 root root 23223 Jan 15 11:47 z2.pyc -rwxr-xr-x 1 root root 469 Jan 15 11:47 Zope.cgi -rw-r--r-- 1 roelvdb roelvdb 6423 May 9 2003 zpasswd.py -rw-r--r-- 1 root root 6782 Jan 15 11:47 zpasswd.pyc drwxrwxr-x 5 roelvdb roelvdb 4096 Jan 15 11:47 ZServer dir var has to be owned by root and have sticky bit set or Zope won't start [root@w2depost05 2-6-3]# ls var/ -al total 70792 drwxr-x--t 2 root roelvdb 4096 Jan 16 14:12 . drwxrwxr-x 11 roelvdb roelvdb 4096 Jan 15 14:55 .. -rw-r--r-T 1 zope roelvdb 110 Oct 16 2000 .cvsignore -rw-r--r-T 1 zope roelvdb 72145769 Jan 16 14:32 Data.fs -rw-r--r-T 1 zope roelvdb 7909 Jun 12 2002 Data.fs.in -rw-r--r-T 1 zope roelvdb 347 Jan 15 12:00 Data.fs.index -rw-r--r-- 1 zope roelvdb 102807 Jan 16 14:34 Data.fs.index.index_tmp -rw-r--r-T 1 zope roelvdb 5 Jan 16 14:12 Data.fs.lock -rw-r--r-T 1 zope roelvdb 367 Jan 16 14:32 Data.fs.tmp -rw-r--r-T 1 zope roelvdb 4 Jan 16 14:12 pcgi.pid srwxrwxrwx 1 root root 0 Jan 16 14:12 pcgi.soc -rw-r--r-T 1 zope roelvdb 107170 Jan 16 14:34 Z2.log -rw-r--r-T 1 zope roelvdb 5 Jan 16 14:12 Z2.pid Traceback (innermost last): Module ZPublisher.Publish, line 98, in publish Module ZPublisher.mapply, line 88, in mapply Module ZPublisher.Publish, line 39, in call_object Module App.ApplicationManager, line 354, in manage_pack Module ZODB.DB, line 526, in pack Module ZODB.FileStorage, line 1503, in pack Module ZODB.fspack, line 684, in pack

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Up-to-date Zope books in print?
by Petter Holmström 16 Jan '04

16 Jan '04

Hello, We're looking for some good, up-to-date Zope-books. So far it looks like the Zope Bible from 2002 is the most recent one. Does anybody know which version of Zope this book covers? Also, does anybody know if there are any commercial books that cover newer versions of Zope? Thanks, -Petter-

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